rs235482997 SNP Detail

Summary

• ID
  rs235482997
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69034334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGGGCCG GCGACTCTCC
  CCACCCGCCC GGGCCCCGCG GGATCCGCCC CAACCACCGC GCCGCACAGA CGCTCCCAGG
  AAGCCGGCCG CCGCCTGCGT CGCCCGCCCG TCCGCTCGCT TCCTCTCGCC CGCCGGGCCT
  CCGCTTCCTG GCTGGCCTCT CCTGCCCTGA GCTCGGGTAC CACAGCAGCT CTGGCGAAGA
  M
  GACTGCGGGG CCAGCGGCGG CGGCGGCAAC GGCGGCGGAA TGTGCTGCCG GCTGAGAGGG
  GGAGGCAGCC TCGATCTGAG GGCCCGGCTT TACGGCCACG CCCATCGCCG CCAACCCGGT
  CCGCCGATTG GCCGGCCGGG CTCCGGAGTG CTTAGCCAAT CAAAAGGGAC GATGGAGAGC
  GGGGGACGGA AGAGCGAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358315294	MGP_WTSI_3_68930923	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs235482997					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358315294	MGP_WTSI_3_68930923	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69034334 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13258	CpG island 13258			within coordinates
Kpna4	karyopherin subunit alpha 4			Coding-NonSynonymous
				mRNA-UTR
Rr397714	regulatory region 397714			9 bp upstream
Rr578129	regulatory region 578129			1026 bp distal
Rr578130	regulatory region 578130			945 bp distal
Rr578131	regulatory region 578131			797 bp distal
Rr578132	regulatory region 578132			81 bp proximal
Tssr902	transcription start site region 902			26 bp downstream
Tssr33536	transcription start site region 33536			1631 bp upstream
Tssr33537	transcription start site region 33537			116 bp upstream
Tssr33538	transcription start site region 33538			35 bp downstream
Tssr33539	transcription start site region 33539			66 bp downstream
Tssr33540	transcription start site region 33540			97 bp downstream