rs235454605 SNP Detail

Summary

• ID
  rs235454605
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148251875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAATTGCT TCTAAGTCTC TGTCTTGGGT CTTCCGGGAC
  TACGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  W
  CCCGTTCTGG TGCCCATAAA AGAAAAAGCA TCAGATCGCC TGCCTTTGGA ATTCTAGGTG
  GTTGTGAGCC TGACATAGTG CTGGGATTTG AATGTGGCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321417769	CHEV_4_147541527	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235454605					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148251875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15297	CpG island 15297	430 bp distal
Fbxo2	F-box protein 2	994 bp downstream
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	150 bp distal
Rr604612	regulatory region 604612	802 bp proximal
Rr604613	regulatory region 604613	834 bp proximal
Rr604614	regulatory region 604614	1059 bp proximal
Tssr44601	transcription start site region 44601	1045 bp upstream