rs235421183 SNP Detail

Summary

• ID
  rs235421183
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107224078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCAGCA CCTGCCTAGC
  ACCTGTCCAG CACCATGTTC AGGTTTTCCT CCTGGAGTCC AGGTACTGAA TTCTTGTCTT
  CATGCTTATG TAGCTAGCTG AGCTACCTCT CCACCAATGG TAATCTTCTT TTTGGAGACA
  GCTGTTTCAC ATATTCCAGA CTAGTCTCAA ACTCACTAGC TAAGGATGGC TTTGAGCTTT
  W
  TAGCCTCCTG CCTCAGTTTC TTGAGTGCTG CCATGTTTTG GGAGGTGCTG TAGGGTTTGG
  TATATATCAG GAAAGCATTT TACAACTCAG TCACACCCCA GCCTTCAATA GTTGTCTTAT
  AGTATATAGT ATTTACATCT TTACCCCATT AACAGGATGT TGTGTTTTTA TCCTTATTTT
  ACACTTGAAG AAATAGAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362757880	MGP_WTSI_4_107039486	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235421183					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362757880	MGP_WTSI_4_107039486	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107224078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14540	CpG island 14540	716 bp proximal
Ndc1	NDC1 transmembrane nucleoporin	1166 bp upstream
Rr367664	regulatory region 367664	706 bp upstream
Rr596979	regulatory region 596979	418 bp proximal
Rr596980	regulatory region 596980	487 bp proximal
Rr596981	regulatory region 596981	914 bp proximal
Rr596982	regulatory region 596982	959 bp proximal
Rr596983	regulatory region 596983	1403 bp proximal
Tssr38245	transcription start site region 38245	848 bp upstream
Tssr38246	transcription start site region 38246	876 bp upstream
Tssr38247	transcription start site region 38247	1123 bp upstream
Tssr38248	transcription start site region 38248	1158 bp upstream
Tssr38249	transcription start site region 38249	1180 bp upstream
Tssr38250	transcription start site region 38250	1194 bp upstream
Tssr38251	transcription start site region 38251	1440 bp upstream