rs235394954 SNP Detail

Summary

• ID
  rs235394954
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116648591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCCATC ACAATCTCCA
  CTCCTACCAG GGCGACTCCC CTAGCCAGGC CACCTCTGCC ATGTGACCCC TATGGTCCTG
  GTGACCTTAT ATGAACCCTC TCTGCCATGT AGGCTTCCTT GGCAATGTTT CCCTTTCTCT
  GAAGATACAG GTCCTTGTCC TTGTCCCCTC TGCAGCCATC TCTCCTCCCT GTGACTCGCT
  S
  GGTTAAATTG CAGCCCAGAG GCAGGGTCCC ACCCACACAC CTGCAGGACA GATTGCTGGT
  TTCTGCTGTT GCCCTCCAGT GTTCTTTCCC GTAAGCTGAG GTAATAAAGT AATTTCCAAC
  CCTCCCTCTC CCCCTCATAC AATATACTCA TATTTCCTGT CCCCGCATCC CCTCCACTCC
  AATCCAGGCT CACTCCCTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369778442	MGP_WTSI_6_116621648	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235394954					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369778442	MGP_WTSI_6_116621648	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116648591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17886	CpG island 17886	1829 bp proximal
Gm67954	predicted gene, 67954	1024 bp upstream
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637230	regulatory region 637230	within coordinates
Rr637231	regulatory region 637231	1349 bp distal
Rr637232	regulatory region 637232	370 bp distal
Rr637233	regulatory region 637233	623 bp proximal
Rr637234	regulatory region 637234	1035 bp proximal
Rr637235	regulatory region 637235	1524 bp proximal
Tssr58385	transcription start site region 58385	79 bp downstream
Tssr58386	transcription start site region 58386	164 bp upstream
Tssr62606	transcription start site region 62606	200 bp upstream
Tssr62607	transcription start site region 62607	809 bp downstream