rs235386580 SNP Detail

Summary

• ID
  rs235386580
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21951192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGCAGTAG TAAACACCTG CCGAAGCACA
  TTCCAGAGGG ATTGAGTAGA GTTTGGTGGC AGACAGATTT GGGTTCACTC TTGGACAGGA
  CGACTAGGAC AACTCCAGCC TTGCTGCCTG GGGGGCTTGT TTGCtttttt tttttttttt
  W
  aaaaaCTGAC AGTCTTCTGA GGATTTAAAC TAATACAGAT AATTAGGATG TATAATGCCC
  ATTACAAATA GGTTTAGAAT AAAGGATAAT TTAAAACATT GTCAATCATT CAATTTTTTT
  AAAATTCTGG GATAGTTTGG ATTTAATCTA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321763868	CHEV_6_21901193	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235386580					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21951192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17189	CpG island 17189	765 bp distal
Gm68432	predicted gene, 68432	1675 bp upstream
Ing3	inhibitor of growth family, member 3	Intron
Rr399583	regulatory region 399583	1693 bp downstream
Rr399584	regulatory region 399584	1018 bp downstream
Rr627030	regulatory region 627030	1835 bp distal
Rr627031	regulatory region 627031	1526 bp distal
Rr627032	regulatory region 627032	20 bp distal
Rr627033	regulatory region 627033	1167 bp distal
Tssr55136	transcription start site region 55136	1510 bp downstream
Tssr55137	transcription start site region 55137	1131 bp downstream
Tssr55138	transcription start site region 55138	792 bp downstream