rs235363088 SNP Detail

Summary

• ID
  rs235363088
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:13839596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGATCTAC ACTCATTCTA
  CCTTCTCGAA CGTGACTAAT GGATCAGGAG TACAAAGATT TTACATGGCT GTTCCTCGCA
  TCCCACCCCA AGCAACAAGA CTCTCCTTTC TCTTCCAAGC TGGGATGACC AATAGGTTGC
  TGATGTCAAA GCGGTGGAGT GTATGAGTTT CCCCTTTCCC TTTTTTTGTT ATTAGACATT
  W
  AAAAAATAAT AATACCAGGA ATATGATGAA TACCGGAAAC TTACACCAGT CCACAAACAC
  CACATAGTCT GACACCTGGT GATTAGGAAC GCCCCAAGAA TCATCCACGT CTCGATTCTC
  CCATTTCCAA AGAGTTTTTG CGAGGGTGGG GTAAGATTTT AAACAACTAC CCACTCTTCA
  CCCCTTAAAA GCTAGCAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367440162	MGP_WTSI_6_13789597	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235363088					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367440162	MGP_WTSI_6_13789597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13839596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17167	CpG island 17167	417 bp distal
Gpr85	G protein-coupled receptor 85	Intron
Rr626594	regulatory region 626594	1866 bp distal
Rr626595	regulatory region 626595	653 bp distal
Rr626596	regulatory region 626596	335 bp proximal
Tssr54956	transcription start site region 54956	896 bp downstream
Tssr54957	transcription start site region 54957	855 bp downstream
Tssr59842	transcription start site region 59842	1490 bp upstream
Tssr59843	transcription start site region 59843	1155 bp upstream
Tssr59844	transcription start site region 59844	979 bp upstream
Tssr59845	transcription start site region 59845	908 bp upstream
Tssr59846	transcription start site region 59846	387 bp upstream
Tssr59847	transcription start site region 59847	257 bp upstream
Tssr59848	transcription start site region 59848	159 bp upstream
Tssr59849	transcription start site region 59849	87 bp upstream
Tssr59850	transcription start site region 59850	63 bp upstream
Tssr59851	transcription start site region 59851	298 bp downstream
Tssr59852	transcription start site region 59852	319 bp downstream