rs235355318 SNP Detail

Summary

• ID
  rs235355318
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83975275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAATCCT ATTCATTCTT
  CCAACTCCTC TCAGATTCTC CCCCACCCAG CCCTACCTAC CCAACCTCCT TGTATCCTCC
  TTTAAAAACA AAAAACAAAA AAAACCTCAT CAACTCCAAT GTATGCAACC CACATACTCC
  AGGGGTGCAC TCATCCACTG GAGCATAACC TACCAAGGCC TTCACCCTTC CCTCCCTCCC
  B
  ACCCCCTCCC TCCCTTCCAG CAGCCTCCAA TTGCCAATAG CTCCTCAAGT GGGAATGGGA
  CCTGTGCCCA CCTCACCTCT CTGTATTGGA ATCTTGTCTG GCTTGAGTTT GGGCAGTCTG
  GTGCATGCTG CCACAACACT GTGAGAAGGT ACGTGCACTG CCCTGTTGTG TCTGCAAAAC
  ACCGCCTCAG CTTCTTCAGT                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss358701121	MGP_WTSI_3_83871890	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	G	C	T	T	T	T	C	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs235355318					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	G	C	T	T	T	T	C	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358701121	MGP_WTSI_3_83871890	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83975275 () rs orientation: forward

Symbol	Name	Function Class
Gm56775	predicted gene, 56775	within coordinates
Rr397735	regulatory region 397735	1209 bp upstream
Rr578973	regulatory region 578973	1686 bp distal
Rr578974	regulatory region 578974	1187 bp proximal
Rr578975	regulatory region 578975	1473 bp proximal