rs235257306 SNP Detail

Summary

• ID
  rs235257306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62443692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGGCTT GTTTCTCTAC
  TACACATCGC GAGAGCTTTC GCACCACACT AAGTTTGACT CTCTGAGGTT TCCGTCGATT
  CTCCCAGCGT GCCGTTCGCC GCTGCTAGGC AACCGTGTGG CCTGGTGCCT AGCTTGGAAA
  GGGTAGGCGT AGACTGAGCC GGGAGAGGCG GGACTCGGAC TGCCAAGTGG GCGGGGCTCT
  Y
  TATAAGAGGT GGGCGGGGCC AAAGCTTTAA CGCGCTTTCG CAATCTCAGC ATTGTCTCCA
  GAGGCTCAGA ACGTAGTAAC TCTTTGGAAT CTGCTTTGAT CCCGCAAAAT CGCGAACGAC
  TGACACTTGA GTGCCCACCG CCCTTTTTTT TTTTTTTTTT TTTTGGCTCG GAACTCAGTG
  TAGATTTTCA TTCAATTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss361714685	MGP_WTSI_4_62186489	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs235257306					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361714685	MGP_WTSI_4_62186489	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62443692 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4933430I17Rik	RIKEN cDNA 4933430I17 gene			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Pole3	polymerase (DNA directed), epsilon 3 (p17 subunit)			387 bp upstream
Rr367636	regulatory region 367636			122 bp downstream
Rr593339	regulatory region 593339			653 bp distal
Rr593340	regulatory region 593340			76 bp distal
Rr593341	regulatory region 593341			within coordinates
Tssr37493	transcription start site region 37493			163 bp upstream
Tssr42018	transcription start site region 42018			1043 bp upstream
Tssr42019	transcription start site region 42019			650 bp upstream
Tssr42020	transcription start site region 42020			605 bp upstream
Tssr42021	transcription start site region 42021			375 bp upstream