rs235249331 SNP Detail

Summary

• ID
  rs235249331
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114157117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCATCA GGCACCCTTA
  ACAGCTGAGC CATCTCACCT CGAGGCCCTA AGGGTTTTGT TGGTGGTGTT GGGTTTTGGT
  TTTGATGTGT TGGTTTTGGT GTTTTGTTGT TGTTGTTGTT GTTGTTGTTG TTGTTGTTGT
  TGTACAGACT CTCACTTCAG ATATGTTAGG ACAGTATCCC TTGAGTTAGG ATATAGTTGT
  C
  AGTACATTTT AACCTCCCAG ATGATTGATA ATTGTAGCCC AGATGAACAC AGCCATAATG
  CCCAATTCTA TGATTACACA TGCAGAGAGG CTTTGAGGCC CCTCAGCTAA CAGAGTCTTA
  TGCACAACCT CAGATGTGTT GTGAGGCTCT GAGTCTAGCT CACACCTATC CTTTGGTTCC
  AGCTAGCTTT CAGGTCTCTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss362912043	MGP_WTSI_4_113972525	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs235249331					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362912043	MGP_WTSI_4_113972525	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114157117 () rs orientation: forward

Symbol	Name	Function Class
Rr597539	regulatory region 597539	542 bp proximal
Rr597540	regulatory region 597540	616 bp proximal