rs235227460 SNP Detail

Summary

• ID
  rs235227460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54505524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAAAAAC AATATATTTT
  TCCTTTCGTC CTCAGAGCCA AGCACATGAT TAATTAATGT TTGTGGAAAA CTTGAGTAAG
  GGATTAGTGG AGGACTGGCC TCTGTGCTCA AAAGAGACTC AGTCTGGAGC CAGGCCCGTT
  GCTTGGGGAG CTAAACAATT CCAGTTAAGA TACTTTACCA AAATTGTAAT CATGAGCTTG
  R
  GGTTGCTCGG ACTCACCCAG CTCCAAAATC CTTACTCCAA ATGGGCTTTT TAAGATGTCT
  ATAAATCTCC TGGCCCCTCA GTCACTGGTG AACTTATGGA GTCTACACCA TGTATCTATT
  GATGAGTGGC TGATTGCCAC GCTACTTGGC AACTTCAAAC AAGTAGCCTT GCTTCATCTC
  TGTCCTTTGG GTGTAAGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772140	CHEV_3_54402025	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235227460					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54505524 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576818	regulatory region 576818	within coordinates