rs235207011 SNP Detail

Summary

• ID
  rs235207011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3424104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTCTC TTCCCCCGCT
  CCCACTTTCA TGCTGGGGAC AGAACCATGT GGAAGGCATG CACTCTGCAC TGAATTATAT
  CTTAATCTTG TGGCTACTGT ATTTGTGACA CTTGCACACA ATTTTTCTTT CCCTTTTCCC
  TCTGTCAGTC TGAAAAACAT TTTATATGTC CATGCAGCAC AATGCATGCA GAAAGTACAT
  R
  TTTATTTAGT TCAAGGTGGC AATGGTTTGG GTAAAAAAAG TATTCCTAAC ACCTCCACAC
  AATCCCTTGG CTCTTCTTAT GACTTCAACT TTAAATCCTG GATGGATTTA AAGGAATACT
  TTTTAAACAC ATGGGCCTTT GATACTGAGC AGAAAACCAC AATGTGTTTA TATAGGGGAA
  GAAGTGGTTA CCAGGAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
ss367209623	MGP_WTSI_6_3374104	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
rs235207011					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367209623	MGP_WTSI_6_3374104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3424104 () rs orientation: forward

Symbol	Name	Function Class
Rr378836	regulatory region 378836	258 bp upstream
Rr625969	regulatory region 625969	421 bp proximal