rs235184213 SNP Detail

Summary

• ID
  rs235184213
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8631354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTTTCCTA GCTCTTCCTG TCAAAGGCTA
  GGTccttcct ttccctttcc ctttcccctt cccttctccc ttcccttccc ttcccttcAT
  GGGCTTGAAA TCCCCCCCGT TCAGCCTCAC TGGAGCTCTT CCCTCTACTT CTGTTCCCCC
  M
  ACCCTAACTC CCCCCAAACC ATGATTAGAC AGCCAAAGTG TCTTCCAGAT GAGAAGAGAA
  TTTTCAAAGG AGCGCCTCAT GCCAGTGATT TATAAATGAG CTGGGACTCT TTCCTATAAA
  TCATTCCACG TGAGCATCCA CTTCACTGGC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321737227	CHEV_6_8581354	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235184213					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8631354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ica1	islet cell autoantigen 1			Intron
				Noncoding-Transcript-Variant
Rr399563	regulatory region 399563			623 bp upstream
Rr626420	regulatory region 626420			172 bp proximal
Rr626421	regulatory region 626421			603 bp proximal