rs235176430 SNP Detail

Summary

• ID
  rs235176430
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:127502715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTCCGC GCCTCCTCCC
  CCGCAGGACG CACAGGGAGC GAGGCCCGGC GCTGCGCTGG CTGCCGGGCT GGCGGGAGGA
  GGGCGTGGGC AGAACCGGGG GCTGGGACCG GAGGCGGTGG GTGGGAGCCC AGGCCTGAGC
  CTTGGAGAGG CTGCTGTGGA GACTGAGAGG AGGAGACTTG GGGGAAGGGG GGGGGGGGGA
  G
  GTGTGGAGGC GGAGCGGGGA CTCAGGAATC GGGCGCTGAG TTGGGGACCG AGGTGACCGA
  GGCCGAGCTG TGGAAGGGGG AGCTTGGGGA CCCAACGGGC GGGGCAGGTC GCTCCTTGCC
  GCCCACGCCG GATGCACAGC CGGCCCTCTC TGCGCCCACG TACCCACGTG AGCGCCCCGC
  CGGCTACATT CCTACTCCCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382189889	MGP_WTSI_10_127103902	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235176430					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382189889	MGP_WTSI_10_127103902	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127502715 () rs orientation: forward

Symbol	Name	Function Class
1700012D01Rik	RIKEN cDNA 1700012D01 gene	277 bp upstream
Gm16229	predicted gene 16229	1362 bp downstream
Nab2	Ngfi-A binding protein 2	Intron
Rr369095	regulatory region 369095	107 bp upstream
Rr440991	regulatory region 440991	225 bp distal
Rr440992	regulatory region 440992	within coordinates
Tssr96239	transcription start site region 96239	271 bp upstream
Tssr96240	transcription start site region 96240	309 bp upstream
Tssr96241	transcription start site region 96241	1545 bp upstream
Tssr99813	transcription start site region 99813	223 bp upstream
Tssr99814	transcription start site region 99814	100 bp upstream
Tssr99815	transcription start site region 99815	29 bp upstream
Tssr99816	transcription start site region 99816	48 bp downstream
Tssr99817	transcription start site region 99817	737 bp downstream
Tssr99818	transcription start site region 99818	803 bp downstream
Tssr99819	transcription start site region 99819	1675 bp downstream