rs235107194 SNP Detail

Summary

• ID
  rs235107194
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133941915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCGC CGCGCCGGAG GCTGGCGGGG
  K
  GGCGGGCGAG CCGGGAAACG TGGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320970173	CHEV_3_133899118	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235107194					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133941915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13850	CpG island 13850	within coordinates
Cxxc4	CXXC finger 4	mRNA-UTR
Rr585624	regulatory region 585624	within coordinates
Rr585625	regulatory region 585625	348 bp proximal
Tssr31786	transcription start site region 31786	177 bp upstream
Tssr31787	transcription start site region 31787	329 bp upstream
Tssr31788	transcription start site region 31788	379 bp upstream
Tssr31789	transcription start site region 31789	431 bp upstream