rs235105015 SNP Detail

Summary

• ID
  rs235105015
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:124606749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGACAA CATGGTTATC
  CATTCACCCA TGCATTGGGT GTGTATGTAT GTAAAAGTGG ATAGCGTGAG CAGCGTGGGG
  TGAGGGCGGG GCTGTTCATC CCTTGGATCT GGAGATACAA GTGGCTGTGA GCCACCGACT
  TGCATGCTGG GAACTGGATT CAGATCCTCT GGAAGAGCAG CAAACGCTCC TCACTGCTGA
  R
  CCAGCTCTCC AGTCCCAACT AATGGGCCCT TGGGTTATAT AGAGATTTTG TGAATTGTGA
  ATAACAGGAA CACAGGGTCG GTGTTTTCCC TTCTCTGCCT AGAGTAGGAA TGGAGTAGAG
  TCCCTTTTCT TTTTTCTTTT CTTTTTTGTT TTTTGGTTTT TTGAGACAGG GTTTCTCTGT
  ATATCCCTGG CTGTCCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321294514	CHEV_4_124390200	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235105015					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124606749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14778	CpG island 14778	1574 bp proximal
Rr367691	regulatory region 367691	1599 bp upstream
Rr599338	regulatory region 599338	1597 bp distal
Rr599339	regulatory region 599339	1857 bp distal
Rr599340	regulatory region 599340	within coordinates
Rr599341	regulatory region 599341	1225 bp proximal
Rr599342	regulatory region 599342	1366 bp proximal
Rr599343	regulatory region 599343	1500 bp proximal
Sf3a3	splicing factor 3a, subunit 3	Intron
Tssr38902	transcription start site region 38902	1853 bp upstream