rs235104825 SNP Detail

Summary

• ID
  rs235104825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70493000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCATTTT CTGCCCTGGG
  TCGCATGTTC TGAATGAGAT AACGTTTTAA AATAGCCCAG ATACCTGAAC GATAGGACTG
  TGATTGGTCA CCTGGTTGTC GGGATTGTGG TTGTCTCTCC ATTCCACTCA AAAGAGACTT
  TTGAAGCCCT TGTTTTTCCA GGGTGTTTCT TCATATGCCA TATTACTTTC CTATTTCCTT
  Y
  AGCTAACCAA ACTCCTAAAT CCCACACTAA TAGGAAACAC AGGAGAAAGA ACTGCTTCAT
  CCCGGGTTCG TAGGAAAATT AATGGCGATG CTTTTTCATC TGGTCTGATT CTGAGTTGAC
  TCATGTGAGG TGTATTATCC TGTTACTTGC AGATTCTGAG TGTGGCCATG AACCCTTAGG
  GAGCTGCAGT ATTTTTATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354398838	MGP_WTSI_2_70500713	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235104825					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354398838	MGP_WTSI_2_70500713	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70493000 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11730	CpG island 11730			256 bp distal
Gm26558	predicted gene, 26558			547 bp upstream
Gorasp2	golgi reassembly stacking protein 2			Intron
				Noncoding-Transcript-Variant
Rr397027	regulatory region 397027			1064 bp upstream
Rr558587	regulatory region 558587			1056 bp distal
Rr558588	regulatory region 558588			1303 bp distal
Rr558589	regulatory region 558589			1131 bp distal
Rr558590	regulatory region 558590			711 bp distal
Rr558591	regulatory region 558591			75 bp distal
Rr558592	regulatory region 558592			1137 bp proximal
Rr558593	regulatory region 558593			1324 bp proximal
Tssr18225	transcription start site region 18225			1196 bp downstream
Tssr18226	transcription start site region 18226			1174 bp downstream
Tssr18227	transcription start site region 18227			1162 bp downstream
Tssr18228	transcription start site region 18228			1104 bp downstream
Tssr18229	transcription start site region 18229			964 bp downstream