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rs235100076 SNP Detail
Summary
  • ID
    rs235100076
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:135145993 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTGGCTATTA GGCTCCTCGG
    TTTTTTGCCT AAGAGTCAGG TTTGGGAAGT AGAATTGTGT ACAGGCCCTC GGCTAATGTC
    ATGGTGCTGC TTCCTAGTCT TGGTTCTTCA AAACTTATTA CAGCTGCTAA GGCTTATTGG
    CATTCAAAAG AAAGGAATGT AACAGATGAA AAACGTTTTG TTCCAAACTT GACTGAGAGT
    Y
    TGGGTATGAC AAACATACCT CAGTTCGCTA AAATGTGGTG ACGAAGTCTG TTCAGAAGCT
    TAACCAAATC TGGGCAGTTA CACAAGAGTA AGTAGGGTTG GGAGGAGGTG GACCGACACT
    GTTGCCACTT CCTGTGTTGT GTGGTCGCTG CTCTCACCCG AAGCTATTTA TCTGAGGCAC
    TGGGAACCCT GTAAAAGCCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359834801 MGP_WTSI_3_135103196 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235100076 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359834801 MGP_WTSI_3_135103196 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:135145993 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930539J05Rik RIKEN cDNA 4930539J05 gene 1567 bp upstream
Cpgi13855 CpG island 13855 580 bp distal
Rr367562 regulatory region 367562 1932 bp downstream
Rr367563 regulatory region 367563 1788 bp downstream
Rr398041 regulatory region 398041 within coordinates
Rr585709 regulatory region 585709 1988 bp distal
Rr585710 regulatory region 585710 1657 bp distal
Rr585711 regulatory region 585711 1011 bp distal
Rr585712 regulatory region 585712 866 bp distal
Rr585713 regulatory region 585713 365 bp distal
Rr585714 regulatory region 585714 636 bp proximal
Tssr1058 transcription start site region 1058 30 bp downstream
Tssr31811 transcription start site region 31811 1929 bp downstream
Tssr31812 transcription start site region 31812 1842 bp downstream
Tssr31813 transcription start site region 31813 1780 bp downstream
Tssr31814 transcription start site region 31814 1747 bp downstream
Tssr31815 transcription start site region 31815 1692 bp downstream
Tssr31816 transcription start site region 31816 1648 bp downstream
Tssr31817 transcription start site region 31817 1452 bp downstream
Tssr31818 transcription start site region 31818 1179 bp downstream
Tssr31819 transcription start site region 31819 1169 bp downstream
Tssr31820 transcription start site region 31820 1134 bp downstream
Tssr31821 transcription start site region 31821 1058 bp downstream
Tssr31822 transcription start site region 31822 792 bp downstream
Tssr31823 transcription start site region 31823 763 bp downstream
Tssr31824 transcription start site region 31824 732 bp downstream
Tssr35783 transcription start site region 35783 1594 bp upstream
Tssr35784 transcription start site region 35784 1527 bp upstream
Tssr35785 transcription start site region 35785 139 bp downstream
Ube2d3 ubiquitin-conjugating enzyme E2D 3 Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory