rs235079270 SNP Detail

Summary

• ID
  rs235079270
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132739257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG CAGGAGGACT ACGCGGGGCG
  C
  CTTCCCTCCC AGGTTTGCAA TTGGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321338144	CHEV_4_132567861	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235079270					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132739257 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Cpgi14982	CpG island 14982			within coordinates
Rr601152	regulatory region 601152			1931 bp distal
Rr601154	regulatory region 601154			430 bp distal
Rr601155	regulatory region 601155			256 bp distal
Rr601156	regulatory region 601156			within coordinates
Rr601157	regulatory region 601157			269 bp proximal
Tssr39436	transcription start site region 39436			454 bp downstream
Tssr39437	transcription start site region 39437			400 bp downstream
Tssr39438	transcription start site region 39438			124 bp downstream