rs235079220 SNP Detail

Summary

• ID
  rs235079220
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156443454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCTCTGCA TCACCCCCAC CGGATCCCTG
  AGGTTTTGGA GTGGCTCCAC CCTTACTCAG GACTCCGCCC CTGTGGGTTG AACTTGCACT
  TTGTTCCTTC TGGCCCCTGA CTGTGTGAGT AATGTCCCAC GTGTATGGCT TGCTGGCCAG
  W
  GTGGAATTTT AAGGCTCTTC TATTCAGAAC AGTTTAACTT TTCATGCTGC TCGGCCAAAG
  GCATGGTCCT GGGACCTGTT CAGCTGCCAT CAACCAGTTA CTGTAGAGAC CAGGACACCT
  TGCTTCCCTG CCTGGGCAGG GATGTCTCGG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320072525	CHEV_1_158546015	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235079220					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156443454 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase			Intron
				mRNA-UTR
Rr396424	regulatory region 396424			1140 bp downstream
Rr396425	regulatory region 396425			within coordinates
Rr421201	regulatory region 421201			1244 bp distal
Rr421202	regulatory region 421202			1041 bp distal
Rr421203	regulatory region 421203			within coordinates
Rr421204	regulatory region 421204			223 bp distal
Rr421205	regulatory region 421205			1104 bp proximal
Tssr9572	transcription start site region 9572			22 bp downstream
Tssr9573	transcription start site region 9573			within coordinates
Tssr9574	transcription start site region 9574			19 bp upstream