rs235021073 SNP Detail

Summary

• ID
  rs235021073
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117152741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAGAAG TGGGATCAAT
  CATCCTGCCT TTCTCCCCCT CCTCTCTTGG AGGGCTGCCT GAGCCCGTGG CCTCCACCTC
  CCCTGCTTTG TATAATTTGA AATGCAGATT TGTAGTGAAG GCAGAGTTCA CCTCTGCATT
  GAAAGGGAAG GCAGGCCCAG AGCTTCCTTC CCTGCCCTCT GAGATGTGCA TTTATGTCTC
  W
  GGATGGATGA GCTTTGGTAG GAATGCTCAA AACCAGGACC AGCCAGACAA ACTGGCAGTC
  CCTGTAAGCG GTTCCCGGGT CATAGGGTTA GGGCACCCCT GTTTAACTTT GGGGTGGGGA
  AAGTATCTGG TTTTCTTTGA TAAATTGCTT GTGAACCACA TTTGCCAAGT GGCCTCCAGG
  CCTCAAACTC AAAGACCGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369791609	MGP_WTSI_6_117125798	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235021073					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791609	MGP_WTSI_6_117125798	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117152741 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637289	regulatory region 637289	1456 bp distal
Rr637290	regulatory region 637290	1708 bp distal
Rr637291	regulatory region 637291	1657 bp distal
Rr637292	regulatory region 637292	563 bp proximal
Tssr58405	transcription start site region 58405	1993 bp downstream
Tssr58406	transcription start site region 58406	1964 bp downstream
Tssr58407	transcription start site region 58407	1942 bp downstream
Tssr58408	transcription start site region 58408	1879 bp downstream
Tssr58409	transcription start site region 58409	1851 bp downstream
Tssr58410	transcription start site region 58410	1833 bp downstream
Tssr58411	transcription start site region 58411	1802 bp downstream
Tssr58412	transcription start site region 58412	1790 bp downstream
Tssr58413	transcription start site region 58413	1766 bp downstream
Tssr58414	transcription start site region 58414	1744 bp downstream
Tssr58415	transcription start site region 58415	1726 bp downstream
Tssr58416	transcription start site region 58416	1708 bp downstream
Tssr58417	transcription start site region 58417	1654 bp downstream
Tssr58418	transcription start site region 58418	1628 bp downstream
Tssr58419	transcription start site region 58419	1608 bp downstream
Tssr58420	transcription start site region 58420	1573 bp downstream
Tssr58421	transcription start site region 58421	1549 bp downstream
Tssr58422	transcription start site region 58422	1536 bp downstream
Tssr58423	transcription start site region 58423	1515 bp downstream
Tssr58424	transcription start site region 58424	1456 bp downstream
Tssr58425	transcription start site region 58425	1417 bp downstream
Tssr58426	transcription start site region 58426	1399 bp downstream
Tssr58427	transcription start site region 58427	1365 bp downstream
Tssr58428	transcription start site region 58428	1354 bp downstream
Tssr58429	transcription start site region 58429	1276 bp downstream
Tssr58430	transcription start site region 58430	1245 bp downstream
Tssr58431	transcription start site region 58431	1146 bp downstream
Tssr58432	transcription start site region 58432	1065 bp downstream
Tssr58433	transcription start site region 58433	1040 bp downstream
Tssr58434	transcription start site region 58434	593 bp downstream
Tssr62622	transcription start site region 62622	1488 bp upstream
Tssr62623	transcription start site region 62623	1468 bp upstream
Tssr62624	transcription start site region 62624	1322 bp upstream
Tssr62625	transcription start site region 62625	1183 bp upstream
Tssr62626	transcription start site region 62626	1118 bp upstream
Tssr62627	transcription start site region 62627	1073 bp upstream
Tssr62628	transcription start site region 62628	941 bp upstream
Tssr62629	transcription start site region 62629	761 bp upstream