rs235012259 SNP Detail

Summary

• ID
  rs235012259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:91283692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATACACAT ACAGAAAGTC
  TTTAAAAAAC TTGCCTTGAT AAGCAGGCAT GGTTGCATCA GTGTCACACA AAAAGGACTT
  TACATCACAT TTTAACACAA AGGAGTGACT CTGCTTTGCA GTGAAATTAA AAAATTTATT
  CTGAAATGTG AGACATACAT GTTAAAGGAG TAAGGGGGCC TGTTCTCGGA AGAGTCACAG
  R
  TCTATTCTCT ACCTACTTGT CCTTGAAGTG TTAGGTTAGT GTCTCAGTTA GGGTTTTACC
  GCTGTGAACA GACACCATGA CCAAGGCAAG TCTTATAAAA GACAACATTT AATTGGAGCT
  GGCTTACAGG TTGAGAGGTT CAGTCCATTA TCATCAAGGG AGGAGCAGGG CAGCATCTAG
  GCAGACATGG TGCAGGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397322312	MGP_WTSI_16_91487049	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235012259					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397322312	MGP_WTSI_16_91487049	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91283692 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm60621	predicted gene, 60621			1814 bp upstream
Ifnar1	interferon (alpha and beta) receptor 1			Intron
				Noncoding-Transcript-Variant
Rr392124	regulatory region 392124			1130 bp downstream
Rr519394	regulatory region 519394			1825 bp distal
Rr519395	regulatory region 519395			1530 bp distal
Rr519396	regulatory region 519396			504 bp distal
Tssr139396	transcription start site region 139396			1738 bp downstream
Tssr139397	transcription start site region 139397			1699 bp downstream
Tssr139398	transcription start site region 139398			1660 bp downstream
Tssr139399	transcription start site region 139399			1510 bp downstream
Tssr139400	transcription start site region 139400			1495 bp downstream
Tssr142090	transcription start site region 142090			1868 bp upstream