rs235003496 SNP Detail

Summary

• ID
  rs235003496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141888596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGAGGG CATCAGATTC
  CATTACAGAT GGTTGTGAGA CACCATGTGG TTGCTGGGAA TTGAACTCAG GACCTCTGGA
  AGAGCAGTCA GTGCTCTTAA CCTCTGAGCC ATCTCTCCAG CCCTGTACTG GCTGGTTTTA
  TGTATCAACT TGACACAGGC TGGAGTTATC ACTGAGAAAG GAGTTTTAGC TGGGGAAGTG
  Y
  CTCCATGAGA TCCAACTGTG GGACATTTTC TTAATTAGTG ATCAAGGGGG TAGGGCCCCT
  TGTGGGTGGT ACCATTTCTG GGTGGGTGAT AGTCTTGGTT CTCTAAGAAA GCAAACTGAG
  CAAACCAGGG GAAGCAAGCC AGTAAAGAAC ATCCCTCCAT GGCCTCTGCA TCAGCTCCAG
  CTTCCTGACC TGCTTGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363539899	MGP_WTSI_4_141717200	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	C	T	T	T	T	C	C	T	T	C	C	T	T	T	T	C	T	C	T	T	T	T	C	T	T	C	T	C	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235003496					SNP	T	T	T	T	C	C	T	T	T	T	C	C	T	T	C	C	T	T	T	T	C	T	C	T	T	T	T	C	T	T	C	T	C	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363539899	MGP_WTSI_4_141717200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141888596 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604011	regulatory region 604011			803 bp distal
Rr604012	regulatory region 604012			943 bp proximal
Rr604013	regulatory region 604013			1011 bp proximal
Rr604014	regulatory region 604014			1072 bp proximal
Rr604015	regulatory region 604015			1340 bp proximal