rs235002009 SNP Detail

Summary

• ID
  rs235002009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104515174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGAGGAAA CACAGGAACC AGAAACTGGG
  TAGCCGTGGG ACAGGACAGG GAAGCCCTAT TCATCAAAtg ctcttctgta tcttgatttt
  ttttttttta accatgctgg agatcaagcc ccaggctcat atatagtaag cacattgcca
  R
  ctgaggcata tccccaacct cTGCAGCTGT TTTGGTTGGT TTGGTTTTTT GAGACAGAAG
  ACAGCTAAGG CTAGCTGTGG ATTTCTGTTT TTCCTTTCAG GCGCTAGAGC AACTGACTGT
  CCTGGGGCCA AGGTCTACGT TCCACTGGAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320445328	CHEV_2_104524986	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235002009					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104515174 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12000	CpG island 12000	491 bp proximal
Rr562107	regulatory region 562107	757 bp proximal
Tcp11l1	t-complex 11 like 1	Intron