rs234970225 SNP Detail

Summary

• ID
  rs234970225
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113600195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTTTTCT GGGAATGCAG
  ATGGAAAAGG AGGGAAAGTT TTACTTTTGT ACTCTGGAAG ACATTTTGAA ATGTGTAGTT
  AAAAATAGAG ACAGACTCAA ACTCATCAAT GAGAAAAACT TTAAATAATA GCATAGGTGG
  GCCCGGCAGC GGTGGTACTC AGCTTTTATA TCAACACTTG GGAGGCAGAG GCAGGAGATT
  S
  GAGGTCAGAC TGGTCTACAG AGTGAGTTCC AAGAGAGCTG GAGCTACCCA GAGAAACCCT
  GTCTTGAAAA ACCAAAAAGC AAAGGCAGAA GGGGAAATAT GGCAAGCCCG TGGAGATCTT
  AAGAGAAGAA ATTAAATTTA AGTACACTCA AAAAAAAAAA AATATATATA TATATATGAG
  GCTCATGCCT GTAATTCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911147	CHEV_6_113573228	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234970225					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113600195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	437 bp proximal
Rr636555	regulatory region 636555	347 bp proximal
Tssr58233	transcription start site region 58233	754 bp upstream
Tssr58234	transcription start site region 58234	814 bp upstream
Tssr58235	transcription start site region 58235	892 bp upstream
Tssr58236	transcription start site region 58236	1433 bp upstream
Tssr62461	transcription start site region 62461	294 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	760 bp upstream