rs234953133 SNP Detail

Summary

• ID
  rs234953133
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137552710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGTGGA CAAATGAGGA
  AATAGACCTG GGGCGTGGCG GGGGGGGGGG GTAGCTTTAG GAGTGTAATC TAACAGTGTT
  TAGCAAGGAA GAAAGAAGGG TAAAAGGCAA AAAACCTGGG GGCACATTTG CCACGCTCAA
  GCCTGTTAGA GCCCTTCACA TCCTTCAATA TTTTCAGTGG GTTTGTTGTT GTTGTTGTTG
  K
  TGGTGGTGGT GGTGGTGGTG TTTGTTTTGC ACAGCTCTGC TGTGGGTCTG GGACTCACAA
  TATTCCTACT CCTAAAGTCT CCTGACTGCT GGGTGAACTG GTAGGAACCA ACAGGCACAC
  TATAGTTATT GTTAAAAAAA TAATAAATTC CTAGTGTGCT AGGACATTCT TTTAATCCCA
  GCACTTGAGA ATCAGGTAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ
ss359894466	MGP_WTSI_3_137509913	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ
rs234953133					SNP	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894466	MGP_WTSI_3_137509913	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137552710 () rs orientation: forward

Symbol	Name	Function Class
Rr375793	regulatory region 375793	315 bp upstream
Rr585989	regulatory region 585989	921 bp distal