rs234924423 SNP Detail

Summary

• ID
  rs234924423
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28075501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCGAATT CTGGCCAAGA
  CTCTTAAAGT GTCTGGAGAC TCCCAAGTTG CCTGGTGCGG GGGGCCGGAG ATTCCAAATG
  GAGCCTAGAA TTCTCACACG TCTTTAAAGC CTCTGTCCCA AACCGGGAGG GTTCATATCT
  ATAATCCTAA ACATTCATAG GGTTGAGGCT GGAGGATTGC CAGGAGTTGC TCGGGGTTCA
  K
  AAGGATACCC AGTCTTCCCT TTTTCCCTGC CCTCCCCTAC AAACAAACAA AAAGTCCATA
  AAGGGTGAGA GGGCTCAGCA AGTAAATGCG CTTGCCACGA AGGCATAAGA CCTAGTTAGA
  TCCCGGGACC CACTTTGTGG AAGAGACCCG ATTCTTGACT AACACTACAC ATTTACAAGT
  CAGGCATGGT GATCTGAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858494	MGP_WTSI_7_29161095	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234924423					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858494	MGP_WTSI_7_29161095	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28075501 () rs orientation: forward

Symbol	Name	Function Class
Gm73785	predicted gene, 73785	within coordinates
Gm73790	predicted gene, 73790	1916 bp downstream
Gm73803	predicted gene, 73803	504 bp upstream
Rr380568	regulatory region 380568	301 bp upstream
Rr400209	regulatory region 400209	144 bp downstream
Rr644238	regulatory region 644238	14 bp distal
Rr644239	regulatory region 644239	588 bp proximal
Rr644240	regulatory region 644240	1857 bp proximal
Tssr65460	transcription start site region 65460	284 bp downstream
Tssr65461	transcription start site region 65461	449 bp upstream
Tssr65462	transcription start site region 65462	650 bp upstream
Tssr65463	transcription start site region 65463	1410 bp upstream
Tssr65464	transcription start site region 65464	1920 bp upstream
Tssr71489	transcription start site region 71489	492 bp upstream
Tssr71490	transcription start site region 71490	894 bp downstream
Tssr71491	transcription start site region 71491	998 bp downstream
Tssr71492	transcription start site region 71492	1054 bp downstream
Tssr71493	transcription start site region 71493	1098 bp downstream
Tssr71494	transcription start site region 71494	1145 bp downstream
Tssr71495	transcription start site region 71495	1190 bp downstream
Tssr71496	transcription start site region 71496	1541 bp downstream
Tssr71497	transcription start site region 71497	1789 bp downstream
Tssr71498	transcription start site region 71498	1847 bp downstream
Tssr71499	transcription start site region 71499	1940 bp downstream
Tssr71500	transcription start site region 71500	1973 bp downstream
Tssr71501	transcription start site region 71501	1991 bp downstream
Zfp36	zinc finger protein 36	707 bp downstream