rs234889090 SNP Detail

Summary

• ID
  rs234889090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151947235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATCCAA AGCGATCTAT
  GGAGCGGTGT TGCCCGGATT TGGGCCTCGG CTCACTCACT CATTAGCTCC ATACCTTGTG
  AGTGTGTGTG TGTGTGGGGG GGGGCGGTCA TAACTTTTCT GTGCCTCAGT TTCCTTCACT
  GTAAAATGGA ATTGGCATCG TGCTCAGCTA GCAGGGTCGC TCTGAAATGT GAGTAGGTCA
  Y
  CACACTTGGC TTTACTTCGT GGAGGCCACT GTTCCCAGCT TCTACTGAGA GCCGACTCAT
  CCTCTCTGGG CAGATCTGAC CGCCCGCGTC CTCGCCTCGG AGGGCCTGAG TCACCACGCT
  GTGCGTCACC CGCGCCTCTG CTCCGCGACC TGCAAATTCA CCCTGAGTCA GCGGCCGGGC
  GCGTCCATTG AGCGCATCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356144619	MGP_WTSI_2_151931051	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	C	C	C	T	C	T	C	T	T	C	T	T	C	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs234889090					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	C	C	C	T	C	T	C	T	T	C	T	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144619	MGP_WTSI_2_151931051	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151947235 () rs orientation: forward

Symbol	Name	Function Class
9230118N01Rik	RIKEN cDNA 9230118N01 gene	within coordinates
Cpgi12438	CpG island 12438	within coordinates
Rr567287	regulatory region 567287	within coordinates
Rr567288	regulatory region 567288	131 bp proximal
Rr567289	regulatory region 567289	193 bp proximal
Rr567290	regulatory region 567290	345 bp proximal
Rr567291	regulatory region 567291	787 bp proximal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)	mRNA-UTR
Tssr20767	transcription start site region 20767	497 bp downstream
Tssr20768	transcription start site region 20768	380 bp downstream
Tssr20769	transcription start site region 20769	407 bp upstream
Tssr20770	transcription start site region 20770	941 bp upstream
Tssr26780	transcription start site region 26780	52 bp downstream
Tssr26781	transcription start site region 26781	725 bp downstream