rs234885437 SNP Detail

Summary

• ID
  rs234885437
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55018994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG TTTTCGAGAC AGGGTTTCTC
  W
  GTATAGCCCT GGCTGTCCCG GAACT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320774364	CHEV_3_54915495	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234885437					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55018994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13184	CpG island 13184	342 bp proximal
Rr576901	regulatory region 576901	996 bp distal
Rr576902	regulatory region 576902	45 bp proximal
Rr576903	regulatory region 576903	434 bp proximal
Rr576904	regulatory region 576904	825 bp proximal
Spart	spartin	535 bp upstream
Tssr29147	transcription start site region 29147	507 bp upstream
Tssr29148	transcription start site region 29148	781 bp upstream
Tssr29149	transcription start site region 29149	804 bp upstream