rs234862154 SNP Detail

Summary

• ID
  rs234862154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:4045136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGACGCCA TGGCTAGTGC
  ACGGTCATGG CAGAGGGCAA CCCACACACT CGGTTTGTGC CTCCAGAAGA GCCCCGTGGA
  CAGATCTGAA CCAACAGGGT TGTGTGACCT TGGACAAGTC CCTAGCCTTC TCCTGAGCCC
  TGTCTCCAGG CCAAGCCGAA TAAGAACTAA GCCCCTTTTC AGACTCCAGA TCGGCAACCC
  R
  GTCCATTGCT TCCCCCCCCC CCCCGCCCCC AGCCCCTCCG GAGTGGTGGG GTCGCTGCGT
  CTGTCACTCC CACGCTCACC CAGGTAGCGC ACCCACGTGT CCCGGTAGAG GTCGCGCTCG
  GCGCCCTGCC GCTGCTGCTC CGACATGACT TCCCCGGCAA GGTTGGAGTC GCTGCAGATT
  AGAGTCTCAC CACAACTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382253138	MGP_WTSI_11_3995139	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234862154					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382253138	MGP_WTSI_11_3995139	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4045136 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2503	CpG island 2503			within coordinates
Cpgi2504	CpG island 2504			1292 bp proximal
Gm51935	predicted gene, 51935			394 bp downstream
Gm72847	predicted gene, 72847			40 bp upstream
Mtfp1	mitochondrial fission process 1			Intron
				Noncoding-Transcript-Variant
Rr369115	regulatory region 369115			954 bp upstream
Rr441722	regulatory region 441722			1451 bp distal
Rr441723	regulatory region 441723			567 bp distal
Rr441724	regulatory region 441724			within coordinates
Rr441725	regulatory region 441725			98 bp proximal
Rr441726	regulatory region 441726			299 bp proximal
Rr441727	regulatory region 441727			1800 bp proximal
Sec14l2	SEC14-like lipid binding 2			1903 bp downstream
Tssr100092	transcription start site region 100092			1717 bp upstream
Tssr106530	transcription start site region 106530			177 bp downstream
Tssr106531	transcription start site region 106531			197 bp downstream
Tssr106532	transcription start site region 106532			208 bp downstream