rs234790455 SNP Detail

Summary

• ID
  rs234790455
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28779509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTTTCA CTGCAGGTGA
  AGGCAAACGT GCCACAGATG CCTGCGGACA CAGAGCTCAG CATACCGTGG TGTTGGTTTG
  CTGTGGACTT ACTTAGATTG ATGAGCATAG CCAGTTTACT CACTGAGATG GGACACTATA
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGCGTGC ACGCGCGTGC
  R
  CGTGCGCGTG AGTCCAGCAC TGACAGGATT CCACGGGTCA GACTCTAGTC AACAAATATT
  GATCTTGGTT AATAGCAAAT CTCACCCATT GATGCAAGGG TTCATAACTC AATGCCAGGT
  TCCCTCAGGG TGAAGAAGCA CTCTAATGTC GTGCTGTGAT GTCGTCTGTT TTCAAATACA
  CAGTTCACTC CCACAACCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ	SWR/J	WSB/EiJ
ss357377858	MGP_WTSI_3_28624282	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ	SWR/J	WSB/EiJ
rs234790455					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357377858	MGP_WTSI_3_28624282	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28779509 () rs orientation: forward

Symbol	Name	Function Class
1700112D23Rik	RIKEN cDNA 1700112D23 gene	within coordinates
Rr574625	regulatory region 574625	1607 bp distal
Rr574626	regulatory region 574626	within coordinates
Rr574627	regulatory region 574627	1797 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	Intron