rs234790206 SNP Detail

Summary

• ID
  rs234790206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143867908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGAAAA CTTCCCCCAG
  CCTTCTTGTC TGAGTCTACG CTGCTAAACA CTCTGCTACA TTGTCTCAAT TAATGGGTTC
  CTCTGAATTA ATGAATTCCT CTGAAAACTT TGGCTCTCCC ATATAAAGAT AGATGGTCCC
  TGATGTCCCA GCACTATGAG AGAGGGGAGG TGGGGGGGGG GGGAGGGAGG AAGTGAAGAA
  R
  GGAGGGAGGG TGGGGGGAGT GTGAAACAAT GGGAAGCTGT GGGTGATTAG TTCAAAATAC
  AGCAAATCTA AAAATACTCT GGCTTCACTT TGAGATATTT GTCCAACAAG AGTGGAACAA
  CTTTAATTAG TGTAACAGGA CAATAGGAAT TAAATTGGCT CGGTCACAAG ATTTTTAAGG
  GATGACACTG ACGGTATTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360061553	MGP_WTSI_3_143825111	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234790206					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360061553	MGP_WTSI_3_143825111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143867908 () rs orientation: forward

Symbol	Name	Function Class
Gm34162	predicted gene, 34162	within coordinates
Rr586589	regulatory region 586589	500 bp distal
Rr586590	regulatory region 586590	1708 bp proximal