rs234778389 SNP Detail

Summary

• ID
  rs234778389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107493226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAGCTC AGTCTGTACG
  GCAGAGGTGA GAGGGGAAGA GCTCGGTGGC CCCCTTCTTC AGAAGGGAAA CTGAGGCTCC
  TTGGTCACCC AGCCATGCTA GATGGCATAC TCAGGCCTTC TCTGTCATCT AGAGACACCT
  CAGTTACCCC AATATGTAAG TCCTTCCCAA AGTCGAGAAG ACAGTTGCTC TTCTATGTTC
  Y
  GCTGTTCTGG GAGTCCGGGG CCCTCTGGTG TCGTAGCCAA TGAAACACCA GCATGGTTCA
  CAGGGTCACA CCCGGGCCCC TGCAGTCGTC TTGCAGTATT ACACAGTCTT CATCCATCCC
  ACACTCCTGG ATTGGAGGCA GCTCCTGGTT GTCTTGCTAA CATGAGATGA ACTTATAGCT
  GCCTTCTCCC ATGACTGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321249700	CHEV_4_107308634	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234778389					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107493226 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	968 bp downstream
Rr597028	regulatory region 597028	1211 bp distal
Rr597029	regulatory region 597029	1738 bp proximal
Rr597030	regulatory region 597030	1834 bp proximal