rs234591047 SNP Detail

Summary

• ID
  rs234591047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132568281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACACTGA GGCTCTCCTA
  CAGTTAGAGT TAGTTCATAT TCAAACAGAA ACGTCATGAA TTCACTGTCA GAGCTTGCTC
  CTTCCTTCCT CCCGCACCCC CCCCCCTTTG ATTTTTTTGA GACAGGGTTT CTCTGTAGCC
  CTGGCTGTCC TTGAACTCAC TCTGCAGACC AGGCTGGCCT GGAACTCAGA AATCTGCCTG
  Y
  CTCTGCCTCC CAAGTGCTGG GATTAAAGGC GTACGCCACC ACTGCCTGGC TAGAGCTTCT
  TTCAGTGTTT AACACTTTCT TCCCAAGTGA TTCAATTATT CAGAGATTTC AGTGGGTCTG
  TCTTTAGAGC ACCCCCCACC CAAACTCCTG CATTTTAATA CTGGCTATGC CCTTCAGAAA
  TAACGCAGCT CAATGTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336770	CHEV_4_132396885	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234591047					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132568281 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14975	CpG island 14975			1409 bp proximal
Ppp1r8	protein phosphatase 1, regulatory subunit 8			Intron
				Noncoding-Transcript-Variant
Rr601096	regulatory region 601096			1117 bp proximal
Tssr43718	transcription start site region 43718			1973 bp downstream