rs234564465 SNP Detail

Summary

• ID
  rs234564465
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132571754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGATAC AGGGTTAAAG
  GTAGTCAACA CTATGCCCTG CTAGACAGTA AAATTAATAA TAATAATAAT AATAAATTCT
  CCAGGTTTCA GTAAGCAACA GCAATAGAAC ATGTCATGGT TTGAATATGC TTGGTCCAGG
  GAGTGGCACT ATTTGGAGGT TTGGACTTGT TGAAATAAGT GTATCATTGT AGGCTTGGGC
  K
  TTAAGTCCTG TATCCTGGCT ACCTGGAAGT CAGTCTTCCA CTAACAGCCT TCAGGTGAAA
  ATGTAGAACT CTCAGCTCCT CCTGCACGAT GCCTGCCTGG ATGCTGCCAT GCTCCAGCCT
  TGATGATAAT GGACTGAACC TATGAACCTA TAAACCAGCT CCAATTAAAT GTTTTCAGCA
  TAAGAGTTGC CTTTGTCGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336790	CHEV_4_132400358	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234564465					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132571754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14975	CpG island 14975	978 bp distal
Ppp1r8	protein phosphatase 1, regulatory subunit 8	1274 bp upstream
Rr367719	regulatory region 367719	1171 bp downstream
Rr367720	regulatory region 367720	984 bp downstream
Rr601096	regulatory region 601096	1331 bp distal
Rr601097	regulatory region 601097	1319 bp distal
Rr601098	regulatory region 601098	784 bp distal
Rr601099	regulatory region 601099	982 bp distal
Tssr43718	transcription start site region 43718	1498 bp upstream
Tssr43719	transcription start site region 43719	1259 bp upstream