rs234526006 SNP Detail

Summary

• ID
  rs234526006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132569062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAAAAACA TTACCCAGAT GAACTCTTGG
  TACCAAATCA GAGATCTGTA ATTAGGGAAC TAGAGCAAAT CAAAACCACG CCCACGAAAC
  CAAGCTCCAA AGGGAGGGAG GTGTGGGGGC ACCCTGAACA GGTGTTTGTG AAAAAAAATC
  Y
  AAGTCATCAG ACTGTTTTCT ATACCTCGCT TCATCATTCA AGGGGATGGA TGCTCAAATG
  TCAAATCACC TGACACAGTT CCTGGTATAC ACCAGACCCT GAGGTAATGA CAGGTGATCT
  CAAAGAAAGA GTCTCTTTAT ATTTGGCTGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336773	CHEV_4_132397666	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234526006					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132569062 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14975	CpG island 14975			628 bp proximal
Ppp1r8	protein phosphatase 1, regulatory subunit 8			Intron
				Noncoding-Transcript-Variant
Rr367719	regulatory region 367719			1412 bp upstream
Rr367720	regulatory region 367720			1525 bp upstream
Rr601096	regulatory region 601096			336 bp proximal
Rr601097	regulatory region 601097			1352 bp proximal
Rr601098	regulatory region 601098			1362 bp proximal
Rr601099	regulatory region 601099			1689 bp proximal
Tssr43718	transcription start site region 43718			1192 bp downstream
Tssr43719	transcription start site region 43719			1360 bp downstream