rs234500611 SNP Detail

Summary

• ID
  rs234500611
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:81247903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC CACTCATGTC TGCCCACTAG
  W
  GTCTGCCCAC TCATGTCTGC CCACT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss362166778	MGP_WTSI_4_80975570	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	T	A	T	T	T	T	T	T	T	A	A	T	T	A	T	A	A	T	A	T	T	T	T	T	A	A	T	T	T	T	T	T	A	T	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs234500611					SNP	A	T	T	A	T	T	T	T	T	T	T	A	A	T	T	A	T	A	A	T	A	T	T	T	T	T	A	A	T	T	T	T	T	T	A	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362166778	MGP_WTSI_4_80975570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81247903 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mpdz	multiple PDZ domain crumbs cell polarity complex component			Intron
				Noncoding-Transcript-Variant
Rr594211	regulatory region 594211			within coordinates
Rr594212	regulatory region 594212			within coordinates
Rr594213	regulatory region 594213			70 bp proximal
Rr594214	regulatory region 594214			238 bp proximal
Rr594215	regulatory region 594215			336 bp proximal
Rr594216	regulatory region 594216			420 bp proximal
Rr594217	regulatory region 594217			476 bp proximal
Rr594218	regulatory region 594218			546 bp proximal
Rr594219	regulatory region 594219			588 bp proximal
Rr594220	regulatory region 594220			700 bp proximal
Rr594221	regulatory region 594221			756 bp proximal