rs234492781 SNP Detail

Summary

• ID
  rs234492781
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109138575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCATCAT TATTAAAATG
  TTCTCTTCCT TCAGAGCCCC ATCCTCGAGG GATACATCTA AACATCACTC ACTTAGGAGA
  ACCTGAGTTC TCCGTTTCTG TAAAACCAAG CGTAGTCATC TCAAGACACC CAGGAGGGAT
  GAGGTACCAA ACACCTGCCA GTCCCTTTCA TCTTCACTGC CCAGAAGTTT GCCTTCTCCA
  K
  AGCTGGGGGC TGTGTACTCC CTGGTATAAG CCCACCTCAG CCTATCAGCC TGCCCTGTGA
  TAGCTCCCTG CCATCTTGTC TCCTTGGCCT AGATTTGCCT GTACTTATAA GGTAGGGCAT
  GTGTTTGGGT AATAGATTAT TTCTATGTTA TGATAAAGAG GTTTTGAGGT GTTTCTTTCC
  AAGAACTTGG AGATAAAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362799477	MGP_WTSI_4_108953983	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234492781					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362799477	MGP_WTSI_4_108953983	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109138575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14571	CpG island 14571	32 bp distal
Eps15	epidermal growth factor receptor pathway substrate 15	Intron
Gm40225	predicted gene, 40225	1136 bp upstream
Rr398389	regulatory region 398389	1068 bp downstream
Rr597299	regulatory region 597299	1247 bp distal
Rr597300	regulatory region 597300	956 bp distal
Rr597301	regulatory region 597301	609 bp distal
Rr597302	regulatory region 597302	912 bp distal
Rr597303	regulatory region 597303	108 bp distal
Tssr38334	transcription start site region 38334	1063 bp downstream
Tssr38335	transcription start site region 38335	1052 bp downstream
Tssr38336	transcription start site region 38336	978 bp downstream