rs234466729 SNP Detail

Summary

• ID
  rs234466729
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44073749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGGTTT TTTGAGGCCA
  TAGTTTCAAT AGTCTGATAG ATTGAGGTAC ACAGACATCT CAAGAATATC TGCTAGACTA
  ATTGCAGATC CAAGACCCAG GAAGGTGGGG AGCGGCCTGT GCTGCTAGCT CCTGATGAAG
  GTTGGTTTTG TTTTGTTTTT AAGATTTTAT TTTAGCTTAT TTTTATCATG TATATGGGGT
  A
  GGGGGGTGGG GCAGAGGATG TGTACACATT AGAGTGCACA TGTCAAAGTC CAGAAGAGGG
  TAACAGATAC CCTGGAGCTG AAGTTAGAGA TCGTGGTGAA CCTCCTGACA TGGGTGACAT
  TTCCCACAGC TAGGTGCAAG AGAATGAGAA GCTAGACAGT ATTCTGAACA GCACAGCTGC
  ACCTGTGTCT CAAACAACAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
ss361335914	MGP_WTSI_4_44086621	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
rs234466729					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361335914	MGP_WTSI_4_44086621	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44073749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	682 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	982 bp distal
Rr591150	regulatory region 591150	485 bp distal
Rr591151	regulatory region 591151	752 bp distal
Rr591152	regulatory region 591152	within coordinates
Tssr41482	transcription start site region 41482	1192 bp upstream
Tssr41483	transcription start site region 41483	1056 bp upstream
Tssr41484	transcription start site region 41484	1018 bp upstream
Tssr41485	transcription start site region 41485	728 bp upstream