rs234434887 SNP Detail

Summary

• ID
  rs234434887
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136640528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGATTTTC CAGTCTGTCT
  GAAGTCCCTC ACTGTTTATG CAGCAGCTGG TCCAGCAAGG CCCTCCCGCC GGGCCTTTCC
  ATGATGGGGA CAGCCACTGG GGACACGGGG AGACAGCCAC TGCCTCTCTG GGGGGCTGCC
  AGAGGAAGCC ATGATGACAT TTCCATCTTC GGGGTCTCCA AGACCAGGCT TGCTTATTTT
  K
  TTGTTGTTGT TGTTATTGTT GTTGTTTAAA AAGACAGAAA GGGAGTTTCT GAGAACCCCA
  GTGTGCCAGT TCACTTCAAA GAAAAAGGAA CAAAGAAAGA AAAACCCGAA ACAAGGGGCG
  AAGGTGAAGC TCAGAAATGG TTTTGAATAT TTTTTCTATT TATTTATTTA TTTATTTATT
  TATTTATTTA TTTATTTATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	LP/J	MOLF/EiJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	SPRET/EiJ
ss363402524	MGP_WTSI_4_136469132	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	LP/J	MOLF/EiJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	SPRET/EiJ
rs234434887					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363402524	MGP_WTSI_4_136469132	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136640528 () rs orientation: forward

Symbol	Name	Function Class
Gm69228	predicted gene, 69228	250 bp upstream
Rr602496	regulatory region 602496	1486 bp distal
Rr602497	regulatory region 602497	1802 bp distal
Rr602498	regulatory region 602498	63 bp distal
Rr602499	regulatory region 602499	940 bp proximal
Rr602500	regulatory region 602500	1526 bp proximal