rs234432398 SNP Detail

Summary

• ID
  rs234432398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113581186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGGAGAT TCAGAGTTGG
  TGGGACACCT CGAACAATAA AGACACTGAA GCTGATGATC TGAGTGTTCA GTCCCACAAG
  ATGGAAGGTG AGGAACCCAC TCCTGCAAGT TGTCCTGTAA CTTCCGCCCG CGTGTTGTGC
  CACGTAAGCG CTCACATATA ATACGAATAA AATAATTTTA ACCTGGCGGT GGTGGCCACA
  Y
  TTTTAATCTC AGCACTCCGG AGGGAAAGGC AGGCTGATCT CTGTGAGTTC GAGGCCAGCC
  TGGTCTACAG AGGGAGTACA AGGACAGCCA AGACTACACA GAGAGACCCT GTCTCGAAAA
  ACAACAACAA CAACAAATTT TAAAAGAAAA CGAGAATGAA CAGAGTTGTG ACCCAAGCAT
  GACAAGCATT CTGAATAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911095	CHEV_6_113554219	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234432398					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113581186 () rs orientation: forward

Symbol	Name	Function Class
Brk1	BRICK1, SCAR/WAVE actin-nucleating complex subunit	547 bp upstream
Cpgi17850	CpG island 17850	150 bp proximal
Gm67049	predicted gene, 67049	within coordinates
Rr636549	regulatory region 636549	57 bp proximal
Rr636550	regulatory region 636550	281 bp proximal
Rr636551	regulatory region 636551	500 bp proximal
Rr636552	regulatory region 636552	1049 bp proximal
Tssr58230	transcription start site region 58230	524 bp upstream