rs234418013 SNP Detail

Summary

• ID
  rs234418013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33197279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGTTGCG GGTCGGGCAG
  CGCGGCGCGG GCTCTCCGCG GGGCGCCCGG GCTACGGGCT ACAGGACGCC GGCGGGCGAG
  AGGGCGGCTG GGCGAGCGGC GCGCTGCGGA GCTGTCCTCC ACGCGGGTGC TGAGCGCGCG
  CGGGCACGGG GACGCGGGGC CGGGCTCTCC GCGGGCGCAG TGCCGCTCGC CGCGCCTCTC
  Y
  AACTCGCCGG TCCTGTGCCC CACTCTCCTC GCCGCTCACG AGGCTGCAGC GTCCCCTCCC
  GCCTCCGTCC GGACGCCAGC CCGCGCCAGC CGCCGCCGCA GCTGCCGAGC GCAGGGCGCG
  CGCCGCCCTC CGGGCCGCGT CGCCGCCGAG AGCCGCTGGC CCGGCGCGCG CGCTCTCGCG
  GAGCCGGGGG CGGGAGGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357482718	MGP_WTSI_3_33042052	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234418013					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357482718	MGP_WTSI_3_33042052	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33197279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13064	CpG island 13064	within coordinates
Pex5l	peroxisomal biogenesis factor 5-like	mRNA-UTR
Rr575054	regulatory region 575054	59 bp distal
Rr575055	regulatory region 575055	within coordinates
Tssr32953	transcription start site region 32953	130 bp upstream
Tssr32954	transcription start site region 32954	106 bp upstream
Tssr32955	transcription start site region 32955	44 bp upstream
Tssr32956	transcription start site region 32956	within coordinates
Tssr32957	transcription start site region 32957	41 bp downstream
Tssr32958	transcription start site region 32958	69 bp downstream
Tssr32959	transcription start site region 32959	97 bp downstream
Tssr32960	transcription start site region 32960	145 bp downstream
Tssr32961	transcription start site region 32961	164 bp downstream