rs234400079 SNP Detail

Summary

• ID
  rs234400079
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90757469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGATCAC ATGCCTTCTA
  CAGCTGACAG AATCTGCTCC TCTTCTTCTC ATGGTCTGAA GCTATAGATA ACTGAAAAAG
  TCTGTCTCAG AACAGAGAGA CCTGAGTTTT AATCCCCAGG CCACACGGAC ACAGCTCTGT
  GTTTGTGTCT CACTTATCTC AGCTTCACGA AGGGCTGTAC TGTTTTTTTT TTTTTGGGGG
  K
  GGGGGTGGGG GTGGGGCTGA GATTAACAAC AGTATAATGC TCCACCCTCA TTCTAAGACT
  CAAGCACAGG TGTTCCTGGG CACACAGGGC ATTCGGTTCT GGAGGGACAC ACATAACCTA
  AGAGACAAAA GTCTCTCCAG CTGTATGTAC TGTGTGTGCT GAGACCCTGA TGCAAGCACC
  TACAGCTCAT GTGGCTGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	NZO/HlLtJ	WSB/EiJ
ss369170712	MGP_WTSI_6_90730481	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	NZO/HlLtJ	WSB/EiJ
rs234400079					SNP	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369170712	MGP_WTSI_6_90730481	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90757469 () rs orientation: forward

Symbol	Name	Function Class
E130314K07Rik	RIKEN cDNA E130314K07 gene	within coordinates
Iqsec1	IQ motif and Sec7 domain 1	Intron
Rr1762	regulatory region 1762	8 bp upstream
Rr634323	regulatory region 634323	1252 bp distal
Tssr62048	transcription start site region 62048	795 bp downstream
Tssr62049	transcription start site region 62049	1537 bp downstream
Tssr62050	transcription start site region 62050	1550 bp downstream