rs234388212 SNP Detail

Summary

• ID
  rs234388212
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163379829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTTGCTC ACCTTTTAGC
  CTCTCTGGGG ATTTCAGACC CCAAATGCCC TGGCAATCCA GTAACCAGGA GGGAAATTTA
  AACCCCAGGG GCTGGGGATG CAGCTGGTAG AACACTTGCT TGCTTGCCTA CCGTGGGTGA
  AGCTCTGTGT TCTTTCTGTA TTCAGCACTG AATAAAGCAC ACCCGACGGT GCACACCTGT
  M
  ATCCTAGTAT TTAGAAAGCA CAGTCAGGAG GACCAGAAGT TCAAGGTCAC TCCCACTAGT
  TAGCGAGTTT AAGGCCAGCC TAAGCTACAT ATACAAAACC CTACCGAAAA ATAAAAATCT
  GAGACTTGAC TCCCTGGGAA ACCGAGGCTC CCTGGCTGAG CCGGCTCTTC CTTAGCCAAG
  GCTTGCCCCA AAGGTGTCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603584	CHEV_2_163363645	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234388212					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163379829 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569403	regulatory region 569403	1890 bp distal
Rr569404	regulatory region 569404	1338 bp proximal