rs234317122 SNP Detail

Summary

• ID
  rs234317122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94262013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA GGCTGGAGGA ATACAATCAC
  Y
  CCCACCCCCA CCCCCACCCC CTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
ss641117968	FVB_NJ_6_94235026	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
rs234317122					SNP	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss641117968	FVB_NJ_6_94235026	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94262013 () rs orientation: forward

Symbol	Name	Function Class
Gm31661	predicted gene, 31661	within coordinates
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	1115 bp upstream
Rr634856	regulatory region 634856	1220 bp distal
Rr634857	regulatory region 634857	1002 bp distal
Rr634858	regulatory region 634858	455 bp distal
Rr634859	regulatory region 634859	within coordinates
Rr634860	regulatory region 634860	1622 bp proximal
Tssr62172	transcription start site region 62172	1491 bp upstream
Tssr62173	transcription start site region 62173	1430 bp upstream
Tssr62174	transcription start site region 62174	1241 bp upstream
Tssr62175	transcription start site region 62175	1212 bp upstream
Tssr62176	transcription start site region 62176	1186 bp upstream
Tssr62177	transcription start site region 62177	1096 bp upstream