rs234265398 SNP Detail

Summary

• ID
  rs234265398
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87004548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGAGTT TCCTTCCCGG
  CACCCACATC TAGTAGCCAC TCTCAGCCAC TTGTAACTCT AGCTCCAGGC AGTTTCGTGC
  TGTCTTCTGG TCTCTGCAGG CACACAAATA CAAACACACA CACTGATACA AACACAGAAT
  AATAAAATCC TTAAAACTTA GAAAGGCTTG ATTATTGTAA CTATAAAATA TAAATCACTT
  W
  AAAAAAAACT TTTATTGGCT GTGAATTTCA CATCATGCAC CCCAGCCCTC CAATTCCACT
  CATTTTCCCA TCCCTTAGTA TCGGCTTTCT GCCCTTGCAA CTTCCTCCTC AAAACAAAAT
  AAAGATAGAA TTAAAAAATC TTGTCATAGA AGCTGGAGTA TGTCACATTG TGTCACACAG
  TATATCCTTT TGTCCATACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772691	CHEV_11_86927224	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234265398					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87004548 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mir301	microRNA 301			633 bp downstream
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103909	transcription start site region 103909			642 bp downstream