rs234206585 SNP Detail

Summary

• ID
  rs234206585
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCATCCTCG GGAGACTCAA CACTAACAAC
  AGTATAAGGA TGCAGCAGCT GGAGCAATGC TAGCCTGACG GCTTTGTCAC CCAACGGTGA
  CTGCTTCAGA CTTTCTGTGC TCATCAGCCT TCCTCTCCAG CCTCCGCTGC TGTGTTATGT
  G
  CAGTAGGCTT TAGAGACCTA GATGATGAAT ATTATTTTTG CTGTTTTGAT TAAAATACAA
  TACTCTCCCG AGAAAGGGAT TTTAAAGATG ATGAGTTTAC GTTTGAATAG GCTGTGCTGG
  TGCACTGTCC CGGGAAGGGC CCTTGAACTT                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321921051	CHEV_6_117122367	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234206585					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149310 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1726 bp distal
Rr637288	regulatory region 637288	82 bp proximal
Rr637289	regulatory region 637289	1517 bp proximal
Rr637290	regulatory region 637290	1702 bp proximal
Rr637291	regulatory region 637291	1753 bp proximal
Tssr58392	transcription start site region 58392	862 bp downstream
Tssr58393	transcription start site region 58393	843 bp downstream
Tssr58394	transcription start site region 58394	803 bp downstream
Tssr58395	transcription start site region 58395	1143 bp upstream
Tssr58396	transcription start site region 58396	1159 bp upstream
Tssr58397	transcription start site region 58397	1197 bp upstream
Tssr58398	transcription start site region 58398	1223 bp upstream
Tssr58399	transcription start site region 58399	1245 bp upstream
Tssr58400	transcription start site region 58400	1273 bp upstream
Tssr58401	transcription start site region 58401	1309 bp upstream
Tssr58402	transcription start site region 58402	1340 bp upstream
Tssr58403	transcription start site region 58403	1358 bp upstream
Tssr58404	transcription start site region 58404	1377 bp upstream
Tssr58405	transcription start site region 58405	1419 bp upstream
Tssr58406	transcription start site region 58406	1449 bp upstream
Tssr58407	transcription start site region 58407	1480 bp upstream
Tssr58408	transcription start site region 58408	1547 bp upstream
Tssr58409	transcription start site region 58409	1569 bp upstream
Tssr58410	transcription start site region 58410	1591 bp upstream
Tssr58411	transcription start site region 58411	1607 bp upstream
Tssr58412	transcription start site region 58412	1634 bp upstream
Tssr58413	transcription start site region 58413	1647 bp upstream
Tssr58414	transcription start site region 58414	1680 bp upstream
Tssr58415	transcription start site region 58415	1695 bp upstream
Tssr58416	transcription start site region 58416	1710 bp upstream
Tssr58417	transcription start site region 58417	1764 bp upstream
Tssr58418	transcription start site region 58418	1797 bp upstream
Tssr58419	transcription start site region 58419	1816 bp upstream
Tssr58420	transcription start site region 58420	1843 bp upstream
Tssr58421	transcription start site region 58421	1862 bp upstream
Tssr58422	transcription start site region 58422	1888 bp upstream
Tssr58423	transcription start site region 58423	1896 bp upstream
Tssr58424	transcription start site region 58424	1958 bp upstream
Tssr62617	transcription start site region 62617	1207 bp downstream
Tssr62618	transcription start site region 62618	1229 bp downstream
Tssr62619	transcription start site region 62619	1265 bp downstream
Tssr62620	transcription start site region 62620	1308 bp downstream
Tssr62621	transcription start site region 62621	1374 bp downstream
Tssr62622	transcription start site region 62622	1926 bp downstream
Tssr62623	transcription start site region 62623	1944 bp downstream