rs234204039 SNP Detail

Summary

• ID
  rs234204039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9071061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTTCCCT TTGCCTTTGC
  ACTGACCGGA GCAGTGGACA TGGTGCAAAT ATGAGGAGGA AAGGTCAAGA ATGGTTGACA
  TGGACAAAAA AGCAGAAAGG ATCTGGTTGG GAGTGCTGCC TTTTACTGGA GAAAAATTAA
  TGCCAGCTTT GTAGAGTGAT TAATATTTGA GCCCCTGTTA CATGGCTGAG GTGCAGCCCT
  R
  ACACAGGGGT ATTTTACGGT CGATTCTGTA AACCTGGTGT GGTGGTACAC AGCTGCAGTC
  ACAGTGCTTG CAAGATAGAG GCAGGAAGAT CAGGTGGTCT GCTCACATTG GGATAGATAG
  TTAGATGTGA GACCCTGTCT CAAGGAGACA AGGAGTTAGA GATGTAACTT AATTGGTAGA
  GTGCTTGCCT AGTGTACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356913837	MGP_WTSI_3_9006001	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234204039					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356913837	MGP_WTSI_3_9006001	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9071061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12969	CpG island 12969	1130 bp distal
Rr374475	regulatory region 374475	1275 bp downstream
Rr374476	regulatory region 374476	1829 bp upstream
Rr573366	regulatory region 573366	1573 bp distal
Rr573367	regulatory region 573367	788 bp distal
Rr573368	regulatory region 573368	141 bp distal
Rr573369	regulatory region 573369	801 bp proximal
Tpd52	tumor protein D52	1237 bp upstream
Tssr32571	transcription start site region 32571	1573 bp upstream
Tssr32572	transcription start site region 32572	1534 bp upstream
Tssr32573	transcription start site region 32573	1486 bp upstream
Tssr32574	transcription start site region 32574	1366 bp upstream
Tssr32575	transcription start site region 32575	1251 bp upstream
Tssr32576	transcription start site region 32576	1230 bp upstream