rs234136912 SNP Detail

Summary

• ID
  rs234136912
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155378717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACTCAG GTAACAGCAC
  GCCAGTAGGA CTGGACCTTT TTGGTTTCCG CTACACAGGA TGAGAGGTCC TGTTCCAGAC
  TCTGCCCATA GTCACCACCC CTACAGCATA TAGGCCTCCT CCTGTCAGGA GGTAGACACA
  GAATCACAAC CCCAATGGAA TGACAAGGTC AGCCAAGGTC AGTTTAGCCA GAGGCCCCGA
  R
  ACTCACCATA TGCCTCCTGC AGGTCAGCGG GACGAGGACG TGGCAGCGTT TATGGACCAG
  CAGCTTGCAG TTGATGCACC TGTAGCCCTG CCTCGAGAGA CCCCATATCC TTTCGCTGCA
  CTGGCCGCAG TACGCTCCCT GTGGACGGAA CAGCAGCTCT CAGGCCCACT TAGCCCTTCC
  CGAAGCCCAT GCCACACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321441553	CHEV_4_154668369	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234136912					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155378717 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prkcz	protein kinase C, zeta			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr606443	regulatory region 606443			1417 bp proximal
Rr606444	regulatory region 606444			1992 bp proximal