rs234107452 SNP Detail

Summary

• ID
  rs234107452
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145189184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCAGAGG CCAGGAGGGT
  AAATGATCAG TAAAAAAGAC CAGGGAGCAA AATGGATGCA TTACATGAAG AAAAGCAGCT
  GGGAGGACAT TTGCCCAACC TCTGTGCTAG GGGTCTGGAA AGGACGGCAT TGCACTGTAG
  CAGGTAGGGA TAGAGGACTG TTTGGAGAAC CTGGAACCAA GGACTGACTT GATTTGTTAA
  A
  TAGGCACGTT GTCTTTTGTT CCAGGGTTTA ATATTCAACA TTAGGGATGG CTGAAGAGAT
  TGAAATGATT TAATTGTAAT CTCAAAAGTT ATTTTTTAAA AAAATGAACT AGTTCTTTTA
  TTTCTTCTCT GCCTAAGTTA TCAATGGAGG TAGAGGGAGG GAGGGACTTA GGTGAGAAAA
  GTGAGAGGGA GGGAAAAAGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss363599283	MGP_WTSI_4_145052517	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs234107452					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363599283	MGP_WTSI_4_145052517	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145189184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15270	CpG island 15270	1009 bp proximal
Gm65281	predicted gene, 65281	1590 bp upstream
Rr377358	regulatory region 377358	453 bp upstream
Rr604377	regulatory region 604377	1100 bp proximal
Rr604378	regulatory region 604378	1601 bp proximal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	1684 bp upstream