rs234104742 SNP Detail

Summary

• ID
  rs234104742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:6214770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATCAATAA AAATGATAGG
  CAAATGCAGC TCAATGGGAC ACATTCATTC TTGGACTAGG ATGGACCCAC AACACCTTCA
  CCTGGGACCT TTTAACTGTA CACTGAGTAT ACTGTCCTTG ACCTATAATT AAAGACATTA
  CAAAAAAATG GTCTTATGGA ATCCACAGAT GTGGATTTGT GTGTGGCTCT CAGTGGTTTT
  Y
  GAATCCAGTT CAGATATATC ATAAACAAGG ACAAAGTTGA GCCTGGTATG GTCATATTTC
  TTTATCCCTG CCCTTGGGAA GAAGAGGCAA TGGAATCTCC ATGCCACCCT GATATACACA
  GCAAACTCCA GATCAGCCAA GGCTACTTAG TAAGACTCAG CCAAAAAAAG AAAAAGAAAA
  AAGACAAAAG ACATAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321731362	CHEV_6_6164770	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234104742					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6214770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17135	CpG island 17135	1890 bp proximal
Rr378879	regulatory region 378879	1311 bp downstream
Rr626224	regulatory region 626224	1505 bp distal
Rr626225	regulatory region 626225	1432 bp proximal
Slc25a13	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	Intron
Tssr59765	transcription start site region 59765	580 bp downstream